PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 337aa MW: 37952.4 Da PI: 7.4978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0009s0540.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	173	192	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ SapurV1A.0009s0540.1.p 173 FSCPLCFKTFNRYNNMQMHM 192 89*****************9 PP
2	zf-C2H2	14.6	9.4e-05	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ SapurV1A.0009s0540.1.p 257 FMCRKCGKAFAVRGDWRTHEKNC 279 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.61	173	195	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	173	200	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-5	173	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	175	195	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.46E-6	239	277	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.9E-6	253	277	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	257	277	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	257	277	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	283	306	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MADPYSNYFN GWYNFKLHHN LSASSSSSNP SLYASYGCNM YSDNDTIHNS SLIQFFQPSL 60 PPSPPLREAL PLLSSSPSRH EHQQESSCSA MEVDRNKERE ESLCDDETVT VALHLGLPGP 120 CSADLVSRLS SSEISSDKEE VTAASGYQTS STLNKGQYWI PTPSQILIGP TQFSCPLCFK 180 TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCRNNI DHPRAKPLKD 240 FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH 300 IKSFGHGHSA NGIDFFEEDD EPASEIEQDN DSTQQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0009s0540.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304767.2	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-135	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	B9GWA1	0.0	B9GWA1_POPTR; Uncharacterized protein
STRING	POPTR_0003s20400.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-130	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0009s0540.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]