PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0009s0410.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 749aa MW: 86587.1 Da PI: 7.3697

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0009s0410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.5	3.9e-27	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++++eHnH SapurV1A.0009s0410.1.p 28 SFYKDYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYIYSFVKEHNH 110 5**************************************999877....9********************************* PP FAR1 88 elap 91 el p SapurV1A.0009s0410.1.p 111 ELLP 114 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-25	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-29	227	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.818	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-9	509	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MDSSVIAACA IPEPHDDIEF ESHEAAYSFY KDYAKSVGFG TAKLSSRRSR SSKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IYSFVKEHNH ELLPAQVHFF 120 RSHRNDDPLK NEVRIRRRKN LSSVSKLFGA YQNVDCLEGY MKNQHDKGRS LVLESGDAQL 180 LLDLFMHMQE ENPKFFYAVD LNEEHQLRNL FWVDTKGMED YRNFDDVVCF DTTYITNKYK 240 IPLVFFTGVN HHVQPTLLGC ALIADETVYT FVWLMQTWYM AMGERAPQVM LTDQNNAIKA 300 AIGAVFPQIC HCFCLWHILE KIPRQLEYVS LWHDNFMVKF NKCIFKSWTE EQFEKRWWKL 360 LDKFNLREVE WVQSLYGDRK YWVPTFMRDI SFAGLSTMLR SESLTSSYDK YVHAETSMRE 420 FIKQYKMILE DRYEEEAKAD FDAWHETAEL KSPSPFEKQM SLVYTHEIFR KFQVEVLGAA 480 ACHLKKESQD ETTTTYTVKD FEDSQSYVVE WNESKSDIYC SCRSFEYKGY LCRHAIVVLQ 540 MSGVFSIPPK YVLQRWTNAA LSRHPIGERL DEVQSKVRRY NDLCRRAIIL GEEGSLSQES 600 YNIALCAIRE ALKQCASLNN SAETSACPNT SGSIEEENQY RNTSKERAPD LQVTGTDKVP 660 RRAGAANTKE RNHSSAVKKG KVTRSGDASV GAQEGFHLMG ISDLGPTQPH NMMPAQLQNV 720 VPTVFHNIMP TQFQNIASTH LHETRLPH*

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MDSSVIAACA IPEPHDDIEF ESHEAAYSFY KDYAKSVGFG TAKLSSRRSR SSKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IYSFVKEHNH ELLPAQVHFF  120
RSHRNDDPLK NEVRIRRRKN LSSVSKLFGA YQNVDCLEGY MKNQHDKGRS LVLESGDAQL  180
LLDLFMHMQE ENPKFFYAVD LNEEHQLRNL FWVDTKGMED YRNFDDVVCF DTTYITNKYK  240
IPLVFFTGVN HHVQPTLLGC ALIADETVYT FVWLMQTWYM AMGERAPQVM LTDQNNAIKA  300
AIGAVFPQIC HCFCLWHILE KIPRQLEYVS LWHDNFMVKF NKCIFKSWTE EQFEKRWWKL  360
LDKFNLREVE WVQSLYGDRK YWVPTFMRDI SFAGLSTMLR SESLTSSYDK YVHAETSMRE  420
FIKQYKMILE DRYEEEAKAD FDAWHETAEL KSPSPFEKQM SLVYTHEIFR KFQVEVLGAA  480
ACHLKKESQD ETTTTYTVKD FEDSQSYVVE WNESKSDIYC SCRSFEYKGY LCRHAIVVLQ  540
MSGVFSIPPK YVLQRWTNAA LSRHPIGERL DEVQSKVRRY NDLCRRAIIL GEEGSLSQES  600
YNIALCAIRE ALKQCASLNN SAETSACPNT SGSIEEENQY RNTSKERAPD LQVTGTDKVP  660
RRAGAANTKE RNHSSAVKKG KVTRSGDASV GAQEGFHLMG ISDLGPTQPH NMMPAQLQNV  720
VPTVFHNIMP TQFQNIASTH LHETRLPH*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0009s0410.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216409	0.0	AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453617.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2K2BAA4	0.0	A0A2K2BAA4_POPTR; Uncharacterized protein
STRING	POPTR_0003s22300.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	SapurV1A.0009s0410.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]