PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0009s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 425aa    MW: 47189.1 Da    PI: 7.261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0009s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12358403655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L++l+P+     +k  + +++L +Av+YIk+Lq
  SapurV1A.0009s0400.1.p 358 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 403
                             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15355416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.90E-12356405No hitNo description
Gene3DG3DSA:4.10.280.102.6E-14357413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-11358408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9358403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MESDLQHQHH FLHGHNQHQQ THQKQMNPGL TRYQSAPSSY FSSNLDRDFC EEFLNRPTSP  60
ETERVFARFL ANSGGKTEDI SSSSPCEIKQ DSPVRESISQ INQQPQMVAS MNIHSSDTRL  120
HQHQQQQQQQ SSYSASQGFY QSRSKPPLPD HNSGSGMNYR SMNSMGLERL PSVKLSSGNN  180
SNLVRHSSSP AGLFSDINIE FENGYAVLRG MGDPGAGKRD PAYSAAGRPP SSSGIMSPIA  240
EMGNKNTGEN SPDSGGFGEA PGNDYVSSYP IGSWDDSAMM SIDSKRHLTD DDRILSGLNS  300
SETQQNEEAG DRPPMLAHHL SLPKTSAEMA TIEKLLQFQD SVPCKIRAKR GCATHPRSIA  360
ERVRRTRISE RMRKLQDLVP NMDKQTNTSD MLDLAVDYIK DLQRQFKALS ENRSRCTCVN  420
KQQP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0009s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164090.0AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304761.10.0transcription factor bHLH122 isoform X1
TrEMBLB9GW810.0B9GW81_POPTR; Uncharacterized protein
STRINGPOPTR_0003s22290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-71bHLH family protein