PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0390.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 630aa    MW: 69632.9 Da    PI: 9.5527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-091447236
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                            ++W t+E++ll+ avk++G ++W+++a ++  ++t
  SapurV1A.0008s0390.2.p 14 LSWGTWEELLLASAVKRHGFKNWDSVALELR-TKT 47
                            58***************************99.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00241269IPR001005SANT/Myb domain
CDDcd001671.29E-51548No hitNo description
PfamPF002494.1E-81547IPR001005SANT/Myb domain
SMARTSM002972.5E-15108371IPR001487Bromodomain
SuperFamilySSF473707.98E-16273374IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.0E-13276381IPR001487Bromodomain
PROSITE profilePS5001411.215281352IPR001487Bromodomain
PfamPF004391.3E-9282352IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MASQDEEIHP ENQLSWGTWE ELLLASAVKR HGFKNWDSVA LELRTKTCLP HLLTTAQICQ  60
QKYLDLNRRF ITNNLHHSHT PEEDYPDEEQ NNVDTDIIDN NFVNVPWFEE LRKLRVAELK  120
QEVKKLEEER ERSFQGDSNT EKPDLKPDRL ENEEDKPGTV SGEESDRENR SVNESNSTAS  180
GGGEDAVPKL EEAEPVQGGS GGPDPVVSGS SRKALEEGAG GGGEEESCEL GDSVTQRSSE  240
SLSSGRKRKG SEGKEEVSVT GGEETVAVSS EPFIGLLEVI GAHKNASLFE SLLQSQEMCA  300
YKDMIRQHMD LEAIQTKLEQ GSYSPSILLF FRDLLLLFNN AFVFFPKHSV ESLIAHKIRS  360
LVMNEMRKNT KRSDSTPVPE NIPSQPKREL DRSDSLLAKH KSSIPSIVCR KRSSISAKPS  420
SSSLGQKIEQ QQQQQINENK PVNDLKPPVN DLKPPTAEQG LLKMKSEEKP VTGARSTRRG  480
KNLAKVSTSL SKKQNTSPDT KAAAPEKSET SKPEKKKNEA LPMEKKKSAV DFLKRIKNNS  540
PAETPKITGR GASNGGERKM EGSGGKGKER VLKKSSDKKQ GKQESSPSKK NVGRPSKKAA  600
EVSSRVSGKR GRESGGKEVA KRPRKRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620628KRPRKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002321.10.0PREDICTED: muscle M-line assembly protein unc-89-like isoform X2
TrEMBLU5GV420.0U5GV42_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23640.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.15e-38DNA-binding bromodomain-containing protein