PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 356aa    MW: 39612.7 Da    PI: 5.1223
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.31.2e-16461212398
                   NF-YC  23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                             l rikki+++dedv +i+  +P l+ska elf+ +l  r++  + +   +tl+   ++++v+  ++fdfl +iv +
  SapurV1A.0008s0120.1.p  46 LVRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSFHLKQCVQTFNVFDFLREIVSK 121
                             78**********************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-2247120IPR009072Histone-fold
PfamPF008084.8E-1648106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.19E-1953123IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKKKLDTRFP AVLLGFLRII DWKRMETLIL ACFSANYLFF VIFWLLVRIK KIMQTDEDVG  60
KIAMAVPLLV SKALELFLQD LCDRTYEITL KRGAKTLNSF HLKQCVQTFN VFDFLREIVS  120
KVPDLGGPDA AGDERGVSKR RKVADDEDND SDEECSRNRT NDTIQTSSSG RGRGRGRGRG  180
RGRGTRSMEK ETAAQHGKFE DDPGIGHQND KHGPKLGRLD MDYEPKDSKD NIPSGRNLQA  240
PVRDFDLNMD LDENGETQPV LASVPTIPAS SLKKPDTTVP ASSLTKPDTA VPASSLKKPD  300
TAVPASSSTK PPPELKHEEV PGWSLEDIEK MDINPVQLAN LNARIDEDED YDEED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-16481071675Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172182RGRGRGRGRGR
2174183RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035029.11e-159PREDICTED: uncharacterized protein LOC105132976 isoform X1
TrEMBLA0A2K2C2081e-142A0A2K2C208_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23260.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-47nuclear factor Y, subunit C11