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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0008s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 517aa MW: 56317.7 Da PI: 5.6689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l SapurV1A.0008s0050.1.p 40 KGPWTSVEDAILIDYVKKHGEGNWNSVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++ +G++ W++ a++++ gRt++++k++w++ SapurV1A.0008s0050.1.p 93 KGSFTPEEENRIIQLHANMGNK-WARMAAELP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.476 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.88E-29 | 37 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.57E-12 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 24.188 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-15 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-11 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-26 | 95 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MSSMMNGTED NMWSKDRRDS PAADEGIDGG MVGGISPLKK GPWTSVEDAI LIDYVKKHGE 60 GNWNSVQKHS GLFRCGKSCR LRWANHLRPD LKKGSFTPEE ENRIIQLHAN MGNKWARMAA 120 ELPGRTDNEI KNYWNTRTKR LQRAGLPLYP PEVCLQGYKM NKDGQNMGKL QTGDAHDPDM 180 MLTEHFKIPE VEFKTLALNP GVLPYSTDLF DASASSVLKQ GVGLSYGQGL VIPTIHPAKR 240 FRESQTIFTG LDGSVSTGIS EFDQLTDYHH GKITGNFGLS SPYSCDLNNY EQSSCGVLPG 300 SHAILNGNSS SSCEPICGAM KLELPSLQCS ETQQDSWGTP ASPLPSLESA DALIQSPPTK 360 ETNSDGQSPR SSGLLEAVLY ESRALKHSKK SPGHQTSDAF VANGWGAHSS PMNVCAAEWE 420 LHADLNSPSG HSASSLFSEC TPISGSSSDE QAYTVRPEPI DQVLSYVEAR EVLHQTDCNR 480 PDVLLGSTWF APSNKYHNDH FFQTDDVAAL LGGDQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 34 | 140 | 1 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0008s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463496.1 | 0.0 | transcription factor GAMYB isoform X2 | ||||
TrEMBL | A0A2K2C202 | 0.0 | A0A2K2C202_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s23170.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 4e-96 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0008s0050.1.p |