PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0006s0790.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 190aa    MW: 21228.5 Da    PI: 4.5857
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0006s0790.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-092291948
                            TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                            lG++ W++Ia++++ gRt++++k+ w+++l
  SapurV1A.0006s0790.3.p  2 LGNR-WSAIAARLP-GRTDNEIKNVWHTHL 29
                            8999.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.315133IPR017930Myb domain
PfamPF002498.4E-8129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-14230IPR009057Homeodomain-like
SuperFamilySSF466891.47E-8237IPR009057Homeodomain-like
CDDcd001673.81E-6429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MLGNRWSAIA ARLPGRTDNE IKNVWHTHLK KRLEQNHLAP EINGRSIDVS RFNHEFKTGP  60
ETVSSSNVVA AGCDQIQEHR PVSPQRCSSD ISSVTTVETS NNTCAKIENS DDFHEMDEVF  120
WSEVLSADNS RMISDLSAIG TEPQLQFPFS PLIIDVEQVH AANSNMSDSM DFWYNLFTRA  180
GELPELPEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0006s0790.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302045.11e-118transcription factor MYB14
TrEMBLB9GS151e-116B9GS15_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03960.11e-117(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-22myb domain protein 14