PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0006s0510.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 98aa    MW: 10775.9 Da    PI: 8.8964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0006s0510.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-091356344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            +WT+   +l+ +a + + ++   +W  +a+ +g g++++++k ++
  SapurV1A.0006s0510.2.p 13 SWTAKQNKLFEKALAVHDKDtpdRWQNVAKAVG-GKSAEEVKRHY 56
                            7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.6E-81062IPR001005SANT/Myb domain
PROSITE profilePS500906.4811260IPR017877Myb-like domain
SuperFamilySSF466891.33E-121268IPR009057Homeodomain-like
PfamPF002491.9E-71356IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-41360IPR009057Homeodomain-like
CDDcd001679.68E-81360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSYFTSSHGP GSSWTAKQNK LFEKALAVHD KDTPDRWQNV AKAVGGKSAE EVKRHYDRLV  60
EDLVYIESGQ APLPNYKPSG NNGREDDLLK SQGLRGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-34487184RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0006s0510.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028852.12e-51PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1733e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K2BCW98e-46A0A2K2BCW9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03640.11e-52(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-38RAD-like 6