PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0006s0510.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 104aa MW: 11551.8 Da PI: 7.8359 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.2e-09 | 13 | 56 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a + + ++ +W +a+ +g g++++++k ++ SapurV1A.0006s0510.1.p 13 SWTAKQNKLFEKALAVHDKDtpdRWQNVAKAVG-GKSAEEVKRHY 56 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.6E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.481 | 12 | 60 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.56E-12 | 12 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 13 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-4 | 13 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.66E-8 | 13 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MSYFTSSHGP GSSWTAKQNK LFEKALAVHD KDTPDRWQNV AKAVGGKSAE EVKRHYDRLV 60 EDLVYIESGQ APLPNYKPSG NNGREDDLLK SQATNVTTFL FQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-34 | 4 | 87 | 1 | 84 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0006s0510.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028852.1 | 2e-51 | PREDICTED: protein RADIALIS-like 5 | ||||
Swissprot | Q1A173 | 5e-35 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2K2BCW9 | 6e-46 | A0A2K2BCW9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s03640.1 | 6e-53 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 9e-38 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0006s0510.1.p |