PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0006s0290.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 431aa MW: 46635.7 Da PI: 6.5851

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0006s0290.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.5e-05	318	357	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq SapurV1A.0006s0290.1.p 318 ARKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 357 57788999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.344	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0094	315	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	317	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.60E-5	319	361	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-9	321	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MESANLHRQH DHQLQEQFAG SSSSATATPA SYAEAGSTHA WNQTITLNSG SFSPNYNGVI 60 FNPRQKYESP VSSVNSTMIH QDLGFQHWND NAGNFSSHSA YHDLQLSKIK DELASDSFPK 120 FTEMLNSPSS TIEDPHLSSS SYFKDEQEDL SLSEKLILKT ISPGFPRNGG HDQFSPGEIS 180 SCDHNGSSFG SDIPGRESFS QIYPSINISY LNQPSSPLIS GSFDMNLQGS DLLTSTRFSG 240 SFADDSLALF KDSLSFGLDR MQQSVQRPSC SPNKISPTKE RTEAKRLSNS LMEPQTTQTA 300 PPKKSRLESR ASCPPLKARK EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQNQV 360 ETLSIPYMKS SGNRTGISIQ AAASNFGGGE PKRDMRSRGL CLVPLSCMSY VTSDGGGGGI 420 WPPPNFGGGT *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MESANLHRQH DHQLQEQFAG SSSSATATPA SYAEAGSTHA WNQTITLNSG SFSPNYNGVI  60
FNPRQKYESP VSSVNSTMIH QDLGFQHWND NAGNFSSHSA YHDLQLSKIK DELASDSFPK  120
FTEMLNSPSS TIEDPHLSSS SYFKDEQEDL SLSEKLILKT ISPGFPRNGG HDQFSPGEIS  180
SCDHNGSSFG SDIPGRESFS QIYPSINISY LNQPSSPLIS GSFDMNLQGS DLLTSTRFSG  240
SFADDSLALF KDSLSFGLDR MQQSVQRPSC SPNKISPTKE RTEAKRLSNS LMEPQTTQTA  300
PPKKSRLESR ASCPPLKARK EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQNQV  360
ETLSIPYMKS SGNRTGISIQ AAASNFGGGE PKRDMRSRGL CLVPLSCMSY VTSDGGGGGI  420
WPPPNFGGGT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0006s0290.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450359.1	0.0	transcription factor bHLH110 isoform X2
TrEMBL	A0A2K2BCS5	0.0	A0A2K2BCS5_POPTR; Uncharacterized protein
STRING	POPTR_0002s03380.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	8e-76	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0006s0290.1.p