PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0005s0750.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 262aa    MW: 28027.3 Da    PI: 6.6469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0005s0750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.4e-051601971355
                             HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             R+++ ++++ L+el+ +      +K + a++L +A+ YI+ Lq
  SapurV1A.0005s0750.1.p 160 REKLGDRIAALQELVSPF-----GKTDTASVLHEAMGYIRFLQ 197
                             88999***********98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.236147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-4153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-11156209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.54E-5156201No hitNo description
Gene3DG3DSA:4.10.280.102.6E-8160202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAGTERFFEG NHLVPEGNPP SFSELLLSND GDSVGAGVAH AFHFSSIEKS PTMLCFGGYT  60
CQKESDIVMF SEETKTTRQP QISGVTCSDS SSASSCNKNC NSVHVISTVS KSNRKRNGSG  120
EEVPMECTNA LAKTPFPSQR NSKKTETKNP GSTGNAKVKR EKLGDRIAAL QELVSPFGKT  180
DTASVLHEAM GYIRFLQDQV KVLCSPYLQN LPQCQGGGEN GGEESVKNLR SRGLCLVSVD  240
CTLPVTNSNG ADFWSPATME N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0005s0750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090383e-36AC209038.1 Populus trichocarpa clone POP007-J20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438786.11e-146transcription factor bHLH113
TrEMBLA0A2K2C5X31e-144A0A2K2C5X3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30670.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.19e-49bHLH family protein