PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0005s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 365aa    MW: 39449.3 Da    PI: 4.4675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0005s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102933331055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  SapurV1A.0005s0400.1.p 293 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 333
                             9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14285349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12288344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-11289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-12292337No hitNo description
PfamPF000101.1E-7293333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MESIGAIAEG EWSYLSGMYT SEEADFMAQL LVNCPLNQVD SSSSFGVPSS FWPNHESTMN  60
MEGVNECLLY SLDIADNNLY QLSQVSSGYS GGGGSIHFPN SSGESYYLGD SHPVMANINS  120
SMSTDFFMGD SYVVDGDDCS NPEMSNGTVE DQSGGKQTVA ALPEPESSLK STRESEMPAS  180
EVPLEDKSSS PPENSKKRSR SSGDAQKNKR KVRSKKRQKI ASTSNNDEES NGGALDDPVS  240
SGWCSDDESN ASRELNGGAS SSLSSKGTAT LNSSGKSRAS RGAATDPQSL YARKRRERIN  300
ERLRILQNLV PNGTKVDIST MLEEAVQYVK FLQIQIKLLS SDDMWMYAPI AYNGMDIGLD  360
HLRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0005s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439154.10.0transcription factor bHLH85
TrEMBLA0A3N7FV150.0A0A3N7FV15_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-43ROOT HAIR DEFECTIVE 6-LIKE 2