PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0005s0260.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 297aa    MW: 32642.8 Da    PI: 10.2041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0005s0260.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11555146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                            +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  SapurV1A.0005s0260.5.p  5 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsavlYLRSNVDLKDKWRN 55
                            79***********************************88**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.85163IPR017930Myb domain
SuperFamilySSF466898.28E-15258IPR009057Homeodomain-like
SMARTSM007171.9E-6459IPR001005SANT/Myb domain
PfamPF002495.9E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-13555IPR009057Homeodomain-like
CDDcd116605.26E-18656No hitNo description
SuperFamilySSF467855.17E-17114194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.7E-15115180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.2E-16115186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.597117185IPR005818Linker histone H1/H5, domain H15
PfamPF005383.8E-9122178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILKDPEFSAV LYLRSNVDLK DKWRNISVMV  60
NGYGSREKPK LAPKMVHHVL RQDEYPMAVG QTGEDISDAK PLAVSSGALL VANPKRTTVR  120
LDNLIMEAIT SLKEPGGSHK TAIAAYIEEQ YWPPNDFKRI LSAKLKYLAA NGKLIKVKRK  180
YKTAPTSVYA ERRRVSPLIL EGRQRISPKI ERDGFNMLTM SQIDLDLGRM RTMTAEQATE  240
VAARAVAEAE AAIAVAEEAT REAETAEAEA EAAQAFAKAA RKTLIGRTTP KMAIQC*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0005s0260.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2777543e-86GU277754.1 Populus balsamifera isolate FBK13 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777553e-86GU277755.1 Populus balsamifera isolate FBK13 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777563e-86GU277756.1 Populus balsamifera isolate FRE01 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777573e-86GU277757.1 Populus balsamifera isolate FRE01 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777583e-86GU277758.1 Populus balsamifera isolate GAL12 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777593e-86GU277759.1 Populus balsamifera isolate GAL12 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777603e-86GU277760.1 Populus balsamifera isolate HAY07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777613e-86GU277761.1 Populus balsamifera isolate HAY07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777623e-86GU277762.1 Populus balsamifera isolate INU03 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777633e-86GU277763.1 Populus balsamifera isolate INU03 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777643e-86GU277764.1 Populus balsamifera isolate KUU07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777653e-86GU277765.1 Populus balsamifera isolate KUU07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777663e-86GU277766.1 Populus balsamifera isolate MGR10 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777673e-86GU277767.1 Populus balsamifera isolate MGR10 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777683e-86GU277768.1 Populus balsamifera isolate NWL07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777693e-86GU277769.1 Populus balsamifera isolate NWL07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777703e-86GU277770.1 Populus balsamifera isolate STO11 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777713e-86GU277771.1 Populus balsamifera isolate STO11 haplotype B putative DNA-binding protein gene, partial sequence.
GenBankGU2777723e-86GU277772.1 Populus balsamifera isolate WHR03 haplotype A putative DNA-binding protein gene, partial sequence.
GenBankGU2777733e-86GU277773.1 Populus balsamifera isolate WHR03 haplotype B putative DNA-binding protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024449537.11e-173telomere repeat-binding factor 1 isoform X2
SwissprotQ8VWK43e-89TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2K2C5M01e-171A0A2K2C5M0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30000.11e-172(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-89telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]