PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0005s0260.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 316aa MW: 34865.4 Da PI: 10.0271

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0005s0260.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.2	1.4e-11	24	74	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ SapurV1A.0005s0260.2.p 24 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsavlYLRSNVDLKDKWRN 74 79*********************************88********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.66E-15	21	77	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-6	23	78	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.41	24	76	IPR017877	Myb-like domain
Pfam	PF00249	6.5E-8	24	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-12	24	74	IPR009057	Homeodomain-like
CDD	cd11660	9.97E-18	25	75	No hit	No description
SuperFamily	SSF46785	5.99E-17	133	213	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.6E-16	134	205	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	1.7E-15	134	199	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	23.597	136	204	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	4.2E-9	141	197	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MIDSIDSWCV WGVYLLARLM GAPKQKWTAE EEAALKAGVI KHGAGKWRTI LKDPEFSAVL 60 YLRSNVDLKD KWRNISVMVN GYGSREKPKL APKMVHHVLR QDEYPMAVGQ TGEDISDAKP 120 LAVSSGALLV ANPKRTTVRL DNLIMEAITS LKEPGGSHKT AIAAYIEEQY WPPNDFKRIL 180 SAKLKYLAAN GKLIKVKRKY KTAPTSVYAE RRRVSPLILE GRQRISPKIE RDGFNMLTMS 240 QIDLDLGRMR TMTAEQATEV AARAVAEAEA AIAVAEEATR EAETAEAEAE AAQAFAKAAR 300 KTLIGRTTPK MAIQC*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0005s0260.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU277754	3e-86	GU277754.1 Populus balsamifera isolate FBK13 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277755	3e-86	GU277755.1 Populus balsamifera isolate FBK13 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277756	3e-86	GU277756.1 Populus balsamifera isolate FRE01 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277757	3e-86	GU277757.1 Populus balsamifera isolate FRE01 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277758	3e-86	GU277758.1 Populus balsamifera isolate GAL12 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277759	3e-86	GU277759.1 Populus balsamifera isolate GAL12 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277760	3e-86	GU277760.1 Populus balsamifera isolate HAY07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277761	3e-86	GU277761.1 Populus balsamifera isolate HAY07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277762	3e-86	GU277762.1 Populus balsamifera isolate INU03 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277763	3e-86	GU277763.1 Populus balsamifera isolate INU03 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277764	3e-86	GU277764.1 Populus balsamifera isolate KUU07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277765	3e-86	GU277765.1 Populus balsamifera isolate KUU07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277766	3e-86	GU277766.1 Populus balsamifera isolate MGR10 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277767	3e-86	GU277767.1 Populus balsamifera isolate MGR10 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277768	3e-86	GU277768.1 Populus balsamifera isolate NWL07 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277769	3e-86	GU277769.1 Populus balsamifera isolate NWL07 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277770	3e-86	GU277770.1 Populus balsamifera isolate STO11 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277771	3e-86	GU277771.1 Populus balsamifera isolate STO11 haplotype B putative DNA-binding protein gene, partial sequence.
GenBank	GU277772	3e-86	GU277772.1 Populus balsamifera isolate WHR03 haplotype A putative DNA-binding protein gene, partial sequence.
GenBank	GU277773	3e-86	GU277773.1 Populus balsamifera isolate WHR03 haplotype B putative DNA-binding protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024449537.1	1e-172	telomere repeat-binding factor 1 isoform X2
Swissprot	Q8VWK4	2e-88	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2K2C5M0	1e-170	A0A2K2C5M0_POPTR; Uncharacterized protein
STRING	POPTR_0001s30000.1	1e-171	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	4e-89	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0005s0260.2.p

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]