PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s1050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 698aa    MW: 73697.3 Da    PI: 6.6555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s1050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.8e-09207251144
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                             r++W++ Ed  l+ av++lG g+W++I r      Rt+ q+  rw
  SapurV1A.0004s1050.2.p 207 RKPWSEAEDMELIAAVQKLGEGNWASIVRGEFkGDRTASQLSQRW 251
                             789************************875444689999998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.271202259IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-12203256IPR009057Homeodomain-like
SuperFamilySSF466896.46E-12203257IPR009057Homeodomain-like
SMARTSM007179.3E-9206257IPR001005SANT/Myb domain
PfamPF002494.4E-7207251IPR001005SANT/Myb domain
CDDcd116602.82E-12208256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MIEKSKKNKK GLISEEDVST LIQRYTATTV LALLQEVAQS DGAKIDWNAL VKRTSTGISN  60
AREYQMLWRH LAYRHDLPEK FDDGAHPLDD DDSDLESELE AFPSVTSEAS TEAAACVKVL  120
IASGLPSDST HPNNTTVEAP LTINIPNGRS LRATSENSQP AVMQGVNISV PVSVQKLSLP  180
AQTSCPASEI YDANGSRSGI FPPRRKRKPW SEAEDMELIA AVQKLGEGNW ASIVRGEFKG  240
DRTASQLSQR WAIIRKRHGN MNVGNVSSAP QLSETQRAAR DAVKMALDPY PIAKSSITNS  300
EASPAQHQCQ QPMTTKSSSI WPVGSSAKSH VMLAKASEKS ILSSDPVRAA AVAAGARIAT  360
QSDAVSLLKA AQAKNAVHIM PTGSSSIKSS MTGGVSTHLD VNPNNRFISS GMATAPTTTR  420
PSGPCPGLPK AISPPSQMKA ASSTAQPPQS TPVTSLNVPS EQTNSGLAKV TLLPPQMKAS  480
SSTAQPTQSF PATSLNAQPE PTNPDLAKAT LLPPQMKASS STAHPTQSFP VTSLNVQSAQ  540
TNAESLPKQG MVTIKDTKAS GSQEVANGQV QKDGAHVSVK EPSEHVQEVI AALTNQEAEL  600
KSQVGTFESS NGSPKLIMNE SGLVNFTGNQ VDGSQNADDN KMTCSPIKEA ENQSAVQENG  660
GNQSERQAEL PSTVSNESCI KVDSISKTEA SNEMLDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s1050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016945.10.0PREDICTED: uncharacterized protein LOC105120448 isoform X2
TrEMBLA0A2K2BGV50.0A0A2K2BGV5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-65MYB_related family protein