PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s1050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 717aa    MW: 75549.4 Da    PI: 6.7947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s1050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08207251144
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                             r++W++ Ed  l+ av++lG g+W++I r      Rt+ q+  rw
  SapurV1A.0004s1050.1.p 207 RKPWSEAEDMELIAAVQKLGEGNWASIVRGEFkGDRTASQLSQRW 251
                             789************************875444689999998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.271202259IPR017930Myb domain
SuperFamilySSF466895.96E-12203257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-12203256IPR009057Homeodomain-like
SMARTSM007179.3E-9206257IPR001005SANT/Myb domain
PfamPF002494.5E-7207251IPR001005SANT/Myb domain
CDDcd116602.94E-12208256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MIEKSKKNKK GLISEEDVST LIQRYTATTV LALLQEVAQS DGAKIDWNAL VKRTSTGISN  60
AREYQMLWRH LAYRHDLPEK FDDGAHPLDD DDSDLESELE AFPSVTSEAS TEAAACVKVL  120
IASGLPSDST HPNNTTVEAP LTINIPNGRS LRATSENSQP AVMQGVNISV PVSVQKLSLP  180
AQTSCPASEI YDANGSRSGI FPPRRKRKPW SEAEDMELIA AVQKLGEGNW ASIVRGEFKG  240
DRTASQLSQR WAIIRKRHGN MNVGNVSSAP QLSETQRAAR DAVKMALDPY PIAKSSITNS  300
AGTTSTKPPN NCVPPTITAE ASPAQHQCQQ PMTTKSSSIW PVGSSAKSHV MLAKASEKSI  360
LSSDPVRAAA VAAGARIATQ SDAVSLLKAA QAKNAVHIMP TGSSSIKSSM TGGVSTHLDV  420
NPNNRFISSG MATAPTTTRP SGPCPGLPKA ISPPSQMKAA SSTAQPPQST PVTSLNVPSE  480
QTNSGLAKVT LLPPQMKASS STAQPTQSFP ATSLNAQPEP TNPDLAKATL LPPQMKASSS  540
TAHPTQSFPV TSLNVQSAQT NAESLPKQGM VTIKDTKASG SQEVANGQVQ KDGAHVSVKE  600
PSEHVQEVIA ALTNQEAELK SQVGTFESSN GSPKLIMNES GLVNFTGNQV DGSQNADDNK  660
MTCSPIKEAE NQSAVQENGG NQSERQAELP STVSNESCIK VDSISKTEAS NEMLDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s1050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016944.10.0PREDICTED: mucin-5AC-like isoform X1
TrEMBLB9GN480.0B9GN48_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.28e-65MYB_related family protein