PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0004s0740.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 81aa MW: 9088.74 Da PI: 11.1473

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0004s0740.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.4e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n + rqvtfskRrng++KKA+EL +LCdaev v+ifsstgkly++ss SapurV1A.0004s0740.1.p 10 RIDNPTSRQVTFSKRRNGLMKKAKELAILCDAEVGVVIFSSTGKLYDFSS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.9E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.216	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.81E-29	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.35E-36	2	60	No hit	No description
PRINTS	PR00404	1.7E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MGRGKIVIRR IDNPTSRQVT FSKRRNGLMK KAKELAILCD AEVGVVIFSS TGKLYDFSST 60 RSDFKISLIY IFSLSIRPLF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	1	70	1	69	MEF2C
5f28_B	1e-19	1	70	1	69	MEF2C
5f28_C	1e-19	1	70	1	69	MEF2C
5f28_D	1e-19	1	70	1	69	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0004s0740.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026433220.1	4e-35	MADS-box transcription factor 23-like isoform X3
Swissprot	A2RVQ5	1e-32	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	A0A438G0F5	1e-35	A0A438G0F5_VITVI; MADS-box transcription factor ANR1
STRING	POPTR_0001s29100.1	3e-36	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	6e-35	AGAMOUS-like 16

Link Out ? help Back to Top
Phytozome	SapurV1A.0004s0740.1.p

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]