PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0004s0380.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 271aa MW: 30340.3 Da PI: 7.6578 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.3e-19 | 125 | 179 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k SapurV1A.0004s0380.2.p 125 RKKLRLTKEQSVVLEDNFKDHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARSK 179 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.8 | 3.5e-39 | 125 | 213 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rl+keq+ +LE++F+ +++L+p++K++la++L+l+prqv+vWFqnrRAR k+kq+E+d+e Lk+++++l++en+rL+ke +eL SapurV1A.0004s0380.2.p 125 RKKLRLTKEQSVVLEDNFKDHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARSKLKQTEVDCELLKKCCETLTSENKRLQKELQEL 211 69************************************************************************************* PP HD-ZIP_I/II 88 ree 90 + + SapurV1A.0004s0380.2.p 212 K-S 213 9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.119 | 121 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-17 | 123 | 185 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.29E-18 | 123 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.59E-16 | 124 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 125 | 179 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-16 | 125 | 179 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 156 | 179 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.5E-22 | 181 | 224 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.4E-9 | 181 | 214 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MIMGFGTTDD LCNTSLGLEL GSFHAEQENC SQSGRLFQPI KKNKLALKYD HMLPSLTLGP 60 SEEVYRSIRK KIDADLQPQA SSFSAVSSFS NSSIKKEREF GIGEEVDVER VSSRVSDEDE 120 EGSPRKKLRL TKEQSVVLED NFKDHSTLNP KQKQALAEQL NLRPRQVEVW FQNRRARSKL 180 KQTEVDCELL KKCCETLTSE NKRLQKELQE LKSLKLSSPV YMQLPAATLT MCPSCERICG 240 GSDQGSSTTT FTDGPKPNFY NPYTHSSAAC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 181 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0004s0380.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302378.1 | 1e-172 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 7e-82 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | B9GNK2 | 1e-171 | B9GNK2_POPTR; HD-ZIP family protein | ||||
STRING | POPTR_0002s11410.1 | 1e-172 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-64 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0004s0380.2.p |
Publications ? help Back to Top | |||
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