PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s0360.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 307aa    MW: 34280.5 Da    PI: 6.0468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s0360.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.5e-123173246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0004s0360.2.p 31 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 73
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.437124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-7327IPR009057Homeodomain-like
SuperFamilySSF466893.29E-211079IPR009057Homeodomain-like
PROSITE profilePS5129421.6662579IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-232879IPR009057Homeodomain-like
SMARTSM007174.8E-112977IPR001005SANT/Myb domain
PfamPF002491.0E-103173IPR001005SANT/Myb domain
CDDcd001672.05E-83375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSAVSESGLK RCGKSCRLRW LNYLRPNIKH GGFSEEEDNI ICSLYISIGS RWSIIAAQLP  60
GRTDNDIKNY WNTRLKKKLL GKQRKEQQAR RSSGLKQEMK RGNGNPVVPA DNNQNPYWPE  120
LPTLAPIPYS NHVPHFNDHA SIRKLLIKLG GKFSDDDQVS HNAINPQFLV DVSYTQQLYD  180
DQSINVSSSA PMEDTLNNSD AQFAQTQYAI DGAAGLQMLQ GESSFPAGLE QMVGGNPPRL  240
DGLEFLLGDD MVNNRIRTNY GTESMIDCGE MGSLIFPPDA SNREGIIQQR LLQECTFDEL  300
RYPGQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-18117940108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s0360.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450763.10.0transcription factor RAX3 isoform X1
TrEMBLB9GNK50.0B9GNK5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11440.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-43myb domain protein 84