PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s0280.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 395aa    MW: 42999.6 Da    PI: 4.9409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s0280.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10241289355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0004s0280.2.p 241 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 289
                             58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17236306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-11236293No hitNo description
PROSITE profilePS5088815.567238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17239306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7241289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDGSGDNIDD LGYQNTGESV MNCPSSGMNT NPFYVSAWDP VVSLSQPGNF GGSSIVSQSG  60
FSNSPFPIVM ENPGISNLVH YPPGSGFVEL MPKFPGFGSG NFSEMVGSLG LTEYGQSAHT  120
GCPPNYNEEA NSAQHQEDQL LSEETTTVAS PNGKRRKRLT ESNSPFDPNK STEGELQKDL  180
SGESRDNAEE LDEKTQTTEQ NPGPSLRGKQ VAKQAKDNAQ SGEAPKENYF HVRARRGQAT  240
NSHSLAERVR REKISERMRM LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA  300
TVNPELQIDV ERILSKDILH SRGGNAAILG FNPGMNSHPY SHRIFQPGIQ AIPNSNPPPH  360
AVLDNELQSY FQMGFDSSSA IDNLGPNARL KPEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s0280.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451922.10.0transcription factor bHLH74 isoform X2
TrEMBLA0A2K2BHD90.0A0A2K2BHD9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11540.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-90bHLH family protein