![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0003s1040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 612aa MW: 67460.6 Da PI: 6.1315 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 4.1e-13 | 444 | 490 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq SapurV1A.0003s1040.1.p 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 490 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.2E-53 | 52 | 240 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.326 | 440 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-15 | 443 | 494 | No hit | No description |
SuperFamily | SSF47459 | 1.28E-18 | 443 | 504 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-19 | 444 | 503 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-10 | 444 | 490 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-17 | 446 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 612 aa Download sequence Send to blast |
MKIEAGMGGG AWNDEDKFMV DAVLGSKAFN YLLSNSVANQ NLLMVMCGDE NLQNKLSDLV 60 DCPNASDFSW NYAIFWQISC SKSGDWVLGW GDGSCREPKE GEESEVTRIL NMRLEDETQQ 120 RMRKRVIQRL QTLFGESDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGNCYASGKH 180 VWISDALKSG PDYCVRSFLA KSAGFQTIVL VATDVGVVEL GSVRSVPESI EMVQSIRSWF 240 SSIRTKPMAA AAAAAMPVVS EKKDENSPFS NFGTVERVEG APKIFGQDLN ISNHGHGFRE 300 KLAIRKMEER PSWNAYQNGS RLPFPAPRNR VHGSGWAQSF GLKHGTPSEV YGSQATANNL 360 QELVNGAREE FRINHYQGQK QVQVQIDFSG ATSGTSVIGR PLNAESEHSD VEASCKEERP 420 GAADDRRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG 480 DAISYINELQ AKLKKMEAER GKLECIGRDT LDVSTNGESH NQAPNVDIQA SHDEVTVRVS 540 CPLDSHPASR VIQALKEAQV TVIESKLSSA NDTVLHTFVI KSEGSEQLTK DKLMAAFSSE 600 SSPLQSLSST G* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
5gnj_B | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
5gnj_E | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
5gnj_F | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
5gnj_G | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
5gnj_I | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
5gnj_M | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
5gnj_N | 2e-30 | 438 | 508 | 2 | 81 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 425 | 433 | RRPRKRGRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0003s1040.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023168.1 | 0.0 | PREDICTED: transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A3N7EJC8 | 0.0 | A0A3N7EJC8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s09520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5448 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0003s1040.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|