PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s1010.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 675aa    MW: 75459.4 Da    PI: 6.7844
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s1010.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22109208197
                             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                             f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF
  SapurV1A.0003s1010.6.p 109 FCKILTASDTSTHGGFSVLRKHATEClppldMSQATPTQELAARDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVF 195
                             99****************************9555566679*********************************************** PP

                             EE-SSSEE..EEEEE CS
                      B3  83 kldgrsefelvvkvf 97 
                                + +++el+v+v+
  SapurV1A.0003s1010.6.p 196 L--RGDNGELRVGVR 208
                             *..348888999986 PP
2Auxin_resp93.92.6e-31235314183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha+ t++ F v+Y+Pr+   ++++ ++k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vg+ d++p +W++S WrsLk
  SapurV1A.0003s1010.6.p 235 ASHAVLTQTLFVVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGIGDISP-EWSGSIWRSLK 314
                             68999*************6..99**********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-40100238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-39103224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-19107209No hitNo description
PROSITE profilePS5086311.434109211IPR003340B3 DNA binding domain
SMARTSM010198.3E-20109211IPR003340B3 DNA binding domain
PfamPF023621.3E-20109208IPR003340B3 DNA binding domain
PfamPF065071.6E-29235314IPR010525Auxin response factor
PfamPF023096.2E-7538595IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-11554635No hitNo description
PROSITE profilePS5174525.528559640IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MLKEDVMICI QSYGRHVQGR WWMFQRLERE FFTSLKLEAS TNQELNQQIP RFNLPPKILC  60
RVINIQLLAE QDTDEVYAQI ALHPEADQTE PTSPDPCPPE PEKQTIHSFC KILTASDTST  120
HGGFSVLRKH ATECLPPLDM SQATPTQELA ARDLHGFEWR FKHIFRGQPR RHLLTTGWST  180
FVTSKRLVAG DAFVFLRGDN GELRVGVRCL ARQQSSIPSS VISSQSMHLG VLATASHAVL  240
TQTLFVVYYK PRTNQYIIGL NKYLEAVKNG FSVGMRFKMR FEGEDSPERR FTGTIVGIGD  300
ISPEWSGSIW RSLKIQWDEP ATIQRPERVS PWDIEPFAAP ASPNLTQQVV KNKRPRPTDI  360
PTSAASSFWY HGSTQSHELA QLGCSTEVQS SESHVWSMRQ KEIDSNLLNN SSSCNTRARP  420
EGMWPSSPHM NVSLNFFPDS AGDNDFATTR SIISGFSSPM SSRQSNCLIS EQVEKGRKYE  480
NSAGCRLFGI DLTSNSGSSA PPEKEPAYPI TKVLVPAASE AERAQTMDVS MYSKEQKQVL  540
SEALLKESRS KQGSATSTRT CTKVQMQGIA VGRALDLTAL KGYMDLINEL EKMFEIEGEL  600
STPKKWAVVF TDDEGDMMLL GDDPWLEFCK MVKKIFIYSS DEVKKTGTRC KLSASSFEGE  660
GTVVSMDSEH RSDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1523633751355Auxin response factor 1
4ldw_A1e-1523633751355Auxin response factor 1
4ldw_B1e-1523633751355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352356KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s1010.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1646980.0KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451070.10.0auxin response factor 18 isoform X3
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A2K2BK810.0A0A2K2BK81_POPTR; Auxin response factor
STRINGPOPTR_0002s17350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]