PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0900.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 290aa    MW: 32388.6 Da    PI: 10.3395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+ Ed ll ++++++G g+W++ +++ g+ R++k+c++rw +yl
  SapurV1A.0003s0900.1.p 14 RGPWTPREDALLTNYIQEHGEGHWRSLPKKSGLLRCGKSCRLRWMNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding53.94.1e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0003s0900.1.p  67 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 112
                             7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.017961IPR017930Myb domain
SuperFamilySSF466893.08E-3011108IPR009057Homeodomain-like
SMARTSM007178.2E-131363IPR001005SANT/Myb domain
PfamPF002494.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-241568IPR009057Homeodomain-like
CDDcd001671.42E-101661No hitNo description
PROSITE profilePS5129427.18262116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002492.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2669116IPR009057Homeodomain-like
CDDcd001671.61E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDALLTNYIQ EHGEGHWRSL PKKSGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNHWNT HLSKRLRSQG  120
TDPSTHKKLP QPVKHEARRR KGSNGTKNTS GKKQRKGRAK PVPAEKHKVH LPKAVRFASL  180
SLPRNDSFGS STVTSLSPSQ VRDPGCGFRT EVAVDVFWGN LKDSDHGGVS FFVGDADHGL  240
VNGSDLECQS LVPTTSTLEK LYQEYLQVLN TNDHHDQVEL NSFAESLLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023154.11e-180PREDICTED: myb-related protein 308-like
TrEMBLB9GR371e-166B9GR37_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17460.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-68myb domain protein 5