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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0003s0670.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 493aa MW: 54379.2 Da PI: 6.0399 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 317 | 362 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L SapurV1A.0003s0670.1.p 317 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 362 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.1E-52 | 25 | 209 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.238 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-18 | 314 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.92E-14 | 316 | 366 | No hit | No description |
Pfam | PF00010 | 7.2E-10 | 317 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 317 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-16 | 319 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MEELIISPSS SSPLVSLSQE TPSTLHQRLQ LVVQNQPDWW SYAIFWRTLN DDSGRLFLGW 60 GDGHFQGSKD TSPKLNTVSN SRMTISNTER KRGMMKGIQS LIGECHDLDM SLMDGTDATD 120 SEWFYVMSLT RSFPPGDGIL GKAYTTGSLI WLTGGHELQF YNCERAKEAK MHGIETLVCI 180 PTSCGVLELG SSCAIRENWG LVQQAKSLFG SDLNAFLVPK GPSNPSEEPT QFLERNISFA 240 DIGIVAGLQE DGASDRGQKS AHETEAAKKH GANKAGQSYL SSEHSDSDFP LLAMHVEKRV 300 PKKRGRKPVL GRDAPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN 360 ELKAKVDELE SQLERDSESK KVKLEVADNT DNQSTTTSVD QSACRPNSSP GGAAHEVEVK 420 FVGSDAMIRV QSENVNYPAS RLMCALRELE FQVHHASMSC VNELMLQDVV VRVPDGLRAE 480 EALKSALLGR LE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-29 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-29 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-29 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-29 | 19 | 209 | 3 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0003s0670.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146939 | 0.0 | EF146939.1 Populus trichocarpa clone WS01225_C18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301432.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | B9GR68 | 0.0 | B9GR68_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s17750.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 1e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0003s0670.1.p |