PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0310.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 596aa    MW: 65617.1 Da    PI: 4.9259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.72.1e-441472752127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                             p+G+rF+Ptdeelv++yLk+k+ g++le   +i+ v+++k+ePwdLp k ++k+e++ wyfF++rd ky++++r+nr tk+g+Wk t
  SapurV1A.0003s0310.1.p 147 PVGYRFRPTDEELVTNYLKPKLLGDDLEDLLIIAVVNVCKHEPWDLPvKsEIKSEDSVWYFFCPRDLKYSNSRRSNRRTKAGFWKPT 233
                             79************************999899**************96358888999****************************** PP

                     NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                             gk+ +v++k +++++g+kktLvfyk  +pk+e+t W++hey 
  SapurV1A.0003s0310.1.p 234 GKTIQVKAKhNKKVIGTKKTLVFYKSASPKPERTGWIIHEYD 275
                             ******99977888***************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-48144297IPR003441NAC domain
PROSITE profilePS5100546.981146297IPR003441NAC domain
PfamPF023652.7E-25147274IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVGSTPSPQL SSQRSTCGCR PLSISQMAIG HISSFSLLTT SPGRLLTLCS CIYNCIVSPS  60
SPAHPHAQSL CHPSSRLQKE KMLPIGRSDS ADPPPANNNS QHLSSLPVSN LHLNSGMLFF  120
PVLGRGMNNK IQSVMTDPAD GMPTVPPVGY RFRPTDEELV TNYLKPKLLG DDLEDLLIIA  180
VVNVCKHEPW DLPVKSEIKS EDSVWYFFCP RDLKYSNSRR SNRRTKAGFW KPTGKTIQVK  240
AKHNKKVIGT KKTLVFYKSA SPKPERTGWI IHEYDEFISG SSLSNLGEYV LCKLKRKLDV  300
KTSKGAPKNH MASISGFEAE PSCSMDSDFE NQNHSELTVN SAFVESESNH HPTSDSENQN  360
SDELMTNSTQ EASDFSHFLA TNIQNPNDLI SSSTLDGWGS CPSISFDFEN ELISKLANDG  420
SGLIQPMTSN HESRYPNGLV VNSAHNGSEQ SHCMASDSEN QNPTDASPYE NWLTASDLED  480
QLSPLQADGP STEMPSHFRN CLLASDFENQ NLDKETDISA PDEGERSSLA VRPLDSENQN  540
PWEKTDISTL EEGGLCCLMA STEKSPAYYS FPEFPQLSPK LLAELEEFLE LEGQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-3013629712168NAC domain-containing protein 19
3swm_B6e-3013629712168NAC domain-containing protein 19
3swm_C6e-3013629712168NAC domain-containing protein 19
3swm_D6e-3013629712168NAC domain-containing protein 19
3swp_A6e-3013629712168NAC domain-containing protein 19
3swp_B6e-3013629712168NAC domain-containing protein 19
3swp_C6e-3013629712168NAC domain-containing protein 19
3swp_D6e-3013629712168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025323.10.0PREDICTED: NAC domain-containing protein 69-like
TrEMBLA0A2K2BKS20.0A0A2K2BKS2_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2834433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-44NAC transcription factor-like 9