PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0002s0910.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 198aa    MW: 22855.8 Da    PI: 8.7061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0002s0910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.4e-172168148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd +l+++++ +G  +Wkt+a++  ++R++k+c++rw++yl
  SapurV1A.0002s0910.1.p 21 KGAWTAEEDRKLAEVIAIHGAIRWKTVAAKAALNRCGKSCRLRWLNYL 68
                            79********************************************97 PP
2Myb_DNA-binding50.83.8e-1674119148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0002s0910.1.p  74 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 119
                             78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5811668IPR017930Myb domain
SMARTSM007171.6E-152070IPR001005SANT/Myb domain
PfamPF002493.1E-162168IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-2721115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-232275IPR009057Homeodomain-like
CDDcd001672.54E-102368No hitNo description
PROSITE profilePS5129425.67269123IPR017930Myb domain
SMARTSM007171.9E-1573121IPR001005SANT/Myb domain
PfamPF002491.6E-1474119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2576124IPR009057Homeodomain-like
CDDcd001678.52E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MATMKNESLK PMETMTNMPN KGAWTAEEDR KLAEVIAIHG AIRWKTVAAK AALNRCGKSC  60
RLRWLNYLRP NIKRGNISDQ EEDLILRLHK LLGNRWSLIA GRLPGRTDNE IKNYWNSHLS  120
KKIKQKGKQT GVSAKEEHRV EKNVRESNLD SEEENKSNQR GEEDSNLNFN VDDFFDFSNE  180
DPLNLEWMNQ FLEIDKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29211237108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0002s0910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175881e-105AC217588.1 Populus trichocarpa clone POP047-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385513.21e-128transcription factor MYB114
SwissprotQ962765e-51MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A2K2B2J31e-127A0A2K2B2J3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06320.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.14e-53myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]