PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0002s0820.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 581aa MW: 63922.3 Da PI: 9.2631 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 465 | 513 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v +G g+W+ I r Rt ++k++w+++l SapurV1A.0002s0820.6.p 465 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 513 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.545 | 458 | 517 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 460 | 520 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-7 | 462 | 515 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.42E-15 | 464 | 523 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 6.15E-18 | 464 | 514 | No hit | No description |
Pfam | PF00249 | 1.9E-5 | 465 | 513 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MHFVADPGQT VGCISNEGSS TGIAQLESLE GLLQSRNKEA GSDKLNARLE ETVPSLAPSL 60 SESHFNQSGS AGECSHSSDN LVAAGSTSSA VTTKPDFSKL KGEICLDNLS IKELHETFKA 120 TFGRETTVKD KQWLKRRISM GLTNSCDVSV TSFIIKDNKL VKKENEEISN CMDGSYAEDQ 180 PIGNQKDLLT SLNQLDYHQV VPEKRLENPS LDDNSGSDDH QTEQRAAKRV RKPTKRYIEE 240 LSEVEPKESN GRLMNLAKNS GHGLISLKSH VRPVRNVILG GRTVVTRLDS LGGYGIEVPC 300 VSRVRRSRPR KNFMALLKFN PSGMGTEAML VKKVHGDHSF PPDDEKESRV FLKANSTPEH 360 VHHQKFNPSG TGMEATSIKK AFGDHSFPPD DGKESRVLKV ISTPEHVHYQ FIGVPEKDKQ 420 FSVMSAIGLG HNMELKCMNS SGDSDDNVVT VPTPKGGIRR KHHRAWTLCE VMKLVEGVSS 480 YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLKASLAQT PQDNGMNSRK NTGAMPIPAP 540 ILLKVRELAE MQAQALPNLS STKIAGSPRK NVHEKQTGFL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 310 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0002s0820.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453597.1 | 0.0 | uncharacterized protein LOC7475702 isoform X1 | ||||
Refseq | XP_024453598.1 | 0.0 | uncharacterized protein LOC7475702 isoform X1 | ||||
Refseq | XP_024453602.1 | 0.0 | uncharacterized protein LOC7475702 isoform X5 | ||||
Refseq | XP_024453603.1 | 0.0 | uncharacterized protein LOC7475702 isoform X5 | ||||
TrEMBL | A0A2K2B2H6 | 0.0 | A0A2K2B2H6_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7EML8 | 0.0 | A0A3N7EML8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-105 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0002s0820.6.p |