PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0002s0820.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 630aa MW: 69554.5 Da PI: 7.334 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.8e-07 | 535 | 583 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v +G g+W+ I r Rt ++k++w+++l SapurV1A.0002s0820.3.p 535 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 583 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.545 | 528 | 587 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 530 | 590 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-7 | 532 | 585 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.89E-15 | 534 | 593 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.89E-18 | 534 | 584 | No hit | No description |
Pfam | PF00249 | 2.2E-5 | 535 | 583 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MGTVVEVEGN DEAKLKECGI HNSTSLSSPK QISDPVVYKL VRLEGDGRIV PATDDELIEV 60 ESLLIDEKCE MHFVADPGQT VGCISNEGSS TGIAQLESLE GLLQSRNKEA GSDKLNARLE 120 ETVPSLAPSL SESHFNQSGS AGECSHSSDN LVAAGSTSSA VTTKPDFSKL KGEICLDNLS 180 IKELHETFKA TFGRETTVKD KQWLKRRISM GLTNSCDVSV TSFIIKDNKL VKKENEEISN 240 CMDGSYAEDQ PIGNQKDLLT SLNQLDYHQV VPEKRLENPS LDDNSGSDDH QTEQRAAKRV 300 RKPTKRYIEE LSEVEPKESN GRLMNLAKNS GHGLISLKSH VRPVRNVILG GRTVVTRLDS 360 LGGYGIEVPC VSRVRRSRPR KNFMALLKFN PSGMGTEAML VKKVHGDHSF PPDDEKESRV 420 FLKANSTPEH VHHQKFNPSG TGMEATSIKK AFGDHSFPPD DGKESRVLKV ISTPEHVHYQ 480 FIGVPEKDKQ FSVMSAIGLG HNMELKCMNS SGDSDDNVVT VPTPKGGIRR KHHRAWTLCE 540 VMKLVEGVSS YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLKASLAQT PQDNGVRNHS 600 YPPPICRTCC LILICAPHPL ENRDYGFHR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 374 | 380 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0002s0820.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT029244 | 1e-96 | CT029244.1 Poplar cDNA sequences. | |||
GenBank | CT029544 | 1e-96 | CT029544.1 Poplar cDNA sequences. | |||
GenBank | CT029545 | 1e-96 | CT029545.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040062.1 | 0.0 | PREDICTED: uncharacterized protein LOC105136426 isoform X2 | ||||
Refseq | XP_011040063.1 | 0.0 | PREDICTED: uncharacterized protein LOC105136426 isoform X2 | ||||
TrEMBL | A0A2K2B2H6 | 0.0 | A0A2K2B2H6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-109 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0002s0820.3.p |