PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0001s2810.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26860.8 Da PI: 8.9723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2.1e-12 | 52 | 95 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+r+N++++ Lr ++P+ + K++ a+i + A++YI++Lq SapurV1A.0001s2810.2.p 52 VSERNRRKRLNERLFALRAVVPNiS------KMDRASIIKDAINYIQELQ 95 57*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.967 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-17 | 46 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-11 | 48 | 99 | No hit | No description |
SMART | SM00353 | 1.0E-14 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-15 | 51 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-10 | 52 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.19E-4 | 165 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGKNTKIYGK QNCFSRMKSL TASWTLDEAI SGYYDSSSPD GAASSAASKN IVSERNRRKR 60 LNERLFALRA VVPNISKMDR ASIIKDAINY IQELQEQERG IQAEILELES GKSTGFDVFE 120 QDLPVLLRSK KKRIDDRCCD FGRSRNISRI EELELSVTSM REKTLVVSLT CRKRTDTMVK 180 LCEVFESLRL KIITANVTTV SERVLKTVFI EADEDKDHLK TRIETAIAAL NDPLSPM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0001s2810.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459928.1 | 1e-129 | transcription factor bHLH35 isoform X1 | ||||
Swissprot | Q2HIV9 | 2e-80 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2K1ZYF2 | 1e-127 | A0A2K1ZYF2_POPTR; Uncharacterized protein | ||||
STRING | XP_010048564.1 | 1e-113 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 4e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0001s2810.2.p |