PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s2810.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 240aa    MW: 27344 Da    PI: 4.8988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s2810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-125497755
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                              Er+RR+r+N++++ Lr ++P+ +      K++ a+i + A++YI++Lq
  SapurV1A.0001s2810.1.p 54 VSERNRRKRLNERLFALRAVVPNiS------KMDRASIIKDAINYIQELQ 97
                            57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9674796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1748111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-1250101No hitNo description
SMARTSM003531.0E-1453102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1553111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-105497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.89E-4167232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDPNGEEYQN LWETKLFFQN EELDSWTLDE AISGYYDSSS PDGAASSAAS KNIVSERNRR  60
KRLNERLFAL RAVVPNISKM DRASIIKDAI NYIQELQEQE RGIQAEILEL ESGKSTGFDV  120
FEQDLPVLLR SKKKRIDDRC CDFGRSRNIS RIEELELSVT SMREKTLVVS LTCRKRTDTM  180
VKLCEVFESL RLKIITANVT TVSERVLKTV FIEADEDKDH LKTRIETAIA ALNDPLSPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s2810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459929.11e-140transcription factor bHLH35 isoform X2
SwissprotQ2HIV92e-85BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2K1ZYF31e-139A0A2K1ZYF3_POPTR; Uncharacterized protein
STRINGXP_009359948.11e-122(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-68bHLH family protein