PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0001s2320.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 463aa MW: 50952.8 Da PI: 8.0563 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.2 | 1.3e-39 | 169 | 246 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhr+h++Ce+hsk+p+v+++++e+rfCqqCsrfhelsefD++krsCr+rL+ hn+rrr++q+ SapurV1A.0001s2320.7.p 169 QCQVEGCSFDLKSAKDYHRKHRICEKHSKSPKVIIADMERRFCQQCSRFHELSEFDDKKRSCRKRLSYHNARRRRPQP 246 5**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.9E-33 | 163 | 231 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.436 | 167 | 244 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-36 | 168 | 249 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-30 | 170 | 243 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MNWNSTASEG DWENIAKISD IPKQVELVYH ESKGGGAVDK AIACSSSGGG LSGSDLWHGA 60 SSKSSVSPSV NSSLKEEIKT YSTTDGFPGD IIKKKDLTRV ESTENTPSLG ASASPGELII 120 GLKLGKRVYF EDNCTTSTAN SSSSSIISTS CTVTPKRSRA SYPSTQSPQC QVEGCSFDLK 180 SAKDYHRKHR ICEKHSKSPK VIIADMERRF CQQCSRFHEL SEFDDKKRSC RKRLSYHNAR 240 RRRPQPEAIR FNSARLSSSF YDGRQQLNSV LNRMPFLEAN ATWQSNCSFK VTHSGDFFIR 300 PAKAGGIRRQ LSCPLNEVPD ATSTILTDSN RFLSFESSTP RAFSQGYDGY ALTSNMEVEP 360 DLRCALSLLS TTSWGLNDHG CTSLDQLTLA NQTSMTQPMI NAELQNWSIA SSENARVEQL 420 PLDSGVHSLD LHGNGNIQLQ ECQLLKPQSP YAMSCFHSNQ FS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-25 | 170 | 243 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 242 | KKRSCRKRLSYHNARRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0001s2320.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213088 | 7e-45 | AC213088.1 Populus trichocarpa clone POP086-B14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446070.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X2 | ||||
TrEMBL | U5FGJ8 | 0.0 | U5FGJ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s14680.2 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 6e-55 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0001s2320.7.p |