PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s1810.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 543aa    MW: 60039.5 Da    PI: 7.4243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s1810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-1777123148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT+eEde l  av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  SapurV1A.0001s1810.1.p  77 KGGWTPEEDETLRTAVATYKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 123
                             688*****************************.************986 PP
2Myb_DNA-binding61.32e-19129175148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+WT+eEd++++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  SapurV1A.0001s1810.1.p 129 KGPWTQEEDDKIIELVAKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 175
                             79******************************.*************97 PP
3Myb_DNA-binding54.92e-17181224146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0001s1810.1.p 181 KDAWTLEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 224
                             679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0972123IPR017930Myb domain
SMARTSM007174.9E-1576125IPR001005SANT/Myb domain
PfamPF002498.7E-1677123IPR001005SANT/Myb domain
SuperFamilySSF466893.3E-1578133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-2379131IPR009057Homeodomain-like
CDDcd001671.95E-1380123No hitNo description
PROSITE profilePS5129432.708124179IPR017930Myb domain
SuperFamilySSF466894.03E-32126222IPR009057Homeodomain-like
SMARTSM007171.0E-18128177IPR001005SANT/Myb domain
PfamPF002498.3E-19129175IPR001005SANT/Myb domain
CDDcd001673.51E-16131175No hitNo description
Gene3DG3DSA:1.10.10.602.4E-28132178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-23179230IPR009057Homeodomain-like
SMARTSM007171.2E-16180228IPR001005SANT/Myb domain
PROSITE profilePS5129422.728180230IPR017930Myb domain
PfamPF002491.3E-15181224IPR001005SANT/Myb domain
CDDcd001671.29E-12183226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSSSSIPAIS LEAEKEEMDE LKIEERCLEN KQLTPASSSS QSEEGSGSAI LKSPGVYSPA  60
TLSPTNRRTT GPIRRAKGGW TPEEDETLRT AVATYKGKSW KKIAEFFPDR SEVQCLHRWQ  120
KVLDPELVKG PWTQEEDDKI IELVAKYGPT KWSVIAKALP GRIGKQCRER WHNHLNPDIK  180
KDAWTLEEEL ALMNAHRIYG NKWAEIAKVL PGRTDNSIKN HWNSSLKKKL DFYLSTGKLP  240
PISKNGFQNG TKDTNKSAVM KTMKESDSAA QTSSGTTDIC KLDEDGKDQL ESTLVLDVVA  300
SSSVLPNEYA DSVDLSCCDS ELQQKFEDNQ DKGIGSGLQF DRPSYGSLYY EPPLVEQLDS  360
YPSNMGNVQH ENNSCPVSSP VSFFTPPCVK SRDLSAQSPE SILRIAAMSF PNTPSIFRKR  420
KTVDLLPSKI GKVGEETIKD RLTMSVEHEN TLEKTAAQDG SLCESPASLG NGSIRSHDKP  480
FNASPPYRLR SKRTAVFKSV ERQLEFTFEK GRSDGTKPTR LSVKGGSTVT EDCSRATKMG  540
VT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-69762305159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-69762305159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s1810.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5673440.0AJ567344.1 Populus tremula x Populus tremuloides mRNA for MYB transcription factor R3 type (myb gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019867.10.0PREDICTED: uncharacterized protein LOC105122457 isoform X1
SwissprotQ6R0321e-179MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2K1ZZ160.0A0A2K1ZZ16_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08570.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-154myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]