PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SapurV1A.0001s1470.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 164aa MW: 17990.8 Da PI: 5.8618

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0001s1470.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.2e-05	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ Fs+ L H++ H SapurV1A.0001s1470.1.p 31 YTCAFCKRGFSNAQALGGHMNIH 53 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.6E-4	29	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.96E-6	29	57	No hit	No description
PROSITE profile	PS50157	11.177	31	58	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MDISLTSSTG KSDQTACDTD YLQGSSHVRS YTCAFCKRGF SNAQALGGHM NIHRRDRAKL 60 KQGFDENFLS LDITKSSEEI SHAPKTPFAL PIDQHDCVTP RNKASEEAQP QPFIVDVKAG 120 TDGDEDNKMQ LNHASSQAGL DLELRLGSDP HESSTRSNTR EFF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	61	RRDRAKLKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0001s1470.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209099	1e-172	AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024448448.1	5e-99	transcriptional regulator TAC1-like
TrEMBL	A0A2K1R7C8	1e-97	A0A2K1R7C8_POPTR; Uncharacterized protein
STRING	POPTR_0006s09020.1	5e-99	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	8e-27	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0001s1470.1.p