PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s1460.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 304aa    MW: 34427.6 Da    PI: 8.2647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s1460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225577123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C + F++   L  H+++H
  SapurV1A.0001s1460.1.p 55 YSCSFCRREFRSAQALGGHMNVH 77
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-65281No hitNo description
PROSITE profilePS5015711.2195582IPR007087Zinc finger, C2H2
SMARTSM003550.00985577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEQARYWMLN KRKHNLNSHF QVSTNPSFDD SWEEQAFAED AAGPLGGCIW PPRSYSCSFC  60
RREFRSAQAL GGHMNVHRRD RARLKQPPSP HNEILQQQEH QIPRSHLQDP YTSFGFQYPS  120
QLCNLVYSPN PNSDPGPIAS PTSSSRVSTT STQENFRVKG LFPPLSSFVV EEKQKRSPRS  180
SPPPQTKLGT ERCYHIPDLR TEGEHNSRKV ESECRAKVNC VKTDLSVSLS LVVRRTLPSI  240
TDSDQEDPAS CKKRRIDKSS LPFSLKSNSV DKSEVLEMSP CTVEELDLEL RLGDRPTSYC  300
IIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125077229superman protein
2l1o_A1e-125077229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s1460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090990.0AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006391.10.0PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLB9HBV30.0B9HBV3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s09040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.14e-27zinc-finger protein 10