PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030313-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 272aa    MW: 30001.4 Da    PI: 4.9829
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030313-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.61.5e-12248272125
                   GATA   1 CsnCgttkTplWRrgpdgnktLCna 25 
                            C++C++ kTp+WR gp g+ktLCna
  SMil_00030313-RA_Salv 248 CTHCQVQKTPQWRTGPLGPKTLCNA 272
                            ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.631242272IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-8245272No hitNo description
Gene3DG3DSA:3.30.50.104.5E-9245272IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.72E-8247272No hitNo description
PfamPF003203.8E-10248272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MECIEARALK PSFLSQMAMK TNSQVYYNDD VWCLTGVNNV VSDDFPVEDL LNLDLPEKDF  60
QELCFSQEDE EISQKGNSLY SSSSSSNFSG DFDSLSVELA VPVEDLENLE WLSQFVDDST  120
PEVSLLCPAG SFVAQTGAFS LNRSHPVHKL PQAQRIPAPY FPVPIPVKAR SKRPRFTGRP  180
WYLASPPLSS ADSSSTTSSS HGSSTLPTFV WSDTVHDSEW FSSAEKPAAK KQKRKTDADS  240
GPVSGRRCTH CQVQKTPQWR TGPLGPKTLC NA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.21e-117GATA transcription factor 5-like
RefseqXP_020551667.11e-117GATA transcription factor 5-like
TrEMBLA0A4D9C5111e-155A0A4D9C511_SALSN; Uncharacterized protein
STRINGMigut.B00182.1.p2e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-24GATA transcription factor 5