 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SMil_00030249-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
| Family |
C2H2 |
| Protein Properties |
Length: 235aa MW: 26203.1 Da PI: 8.0223 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00030249-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.2 | 0.0012 | 132 | 150 | 1 | 19 |
EEETTTTEEESSHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrH 19
ykC++C+k F++ L H
SMil_00030249-RA_Salv 132 YKCEKCNKLFKSYQALGGH 150
9**********98877655 PP
|
| 2 | zf-C2H2 | 12.5 | 0.00046 | 181 | 203 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp C+++F + L H r+H
SMil_00030249-RA_Salv 181 HECPFCDRVFASGQALGGHKRSH 203
79*****************9999 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13912 | 1.0E-5 | 3 | 26 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.494 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.77 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 40 | 132 | 152 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.6 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 4.3E-9 | 132 | 156 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.52E-8 | 132 | 203 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 178 | 203 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| Pfam | PF13912 | 2.9E-11 | 180 | 203 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.494 | 181 | 203 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.023 | 181 | 203 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 183 | 203 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MERHRCKVCF RNFGDGRALG GHMRSHSMNS SKQVEETHSC SSSRGEVVEN REDGETAPSS 60
RIRAREITNY EERSPLSSVS DTATEEDIAR CLMMLSRDRR ERRNENDDDD DDEDSGHLRK 120
AKGAKVVIRG KYKCEKCNKL FKSYQALGGH RASYNKKIKT DVAARFSSGP AAAAAVEEKV 180
HECPFCDRVF ASGQALGGHK RSHFRGASSV RIISRIGENL DIDLNLPAPV DDGEQ
|
