PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030103-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 295aa    MW: 32838.5 Da    PI: 7.9027
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030103-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.13.1e-31209264156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W++eLH++F++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  SMil_00030103-RA_Salv 209 KARRCWSTELHRKFLQALQQLGGSHLATPKQIRELMKVDGLTNDEVKSHLQKYRLH 264
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-27206267IPR009057Homeodomain-like
PROSITE profilePS5129414.028206266IPR017930Myb domain
SuperFamilySSF466894.48E-18207266IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-27209264IPR006447Myb domain, plants
PfamPF002491.2E-7211262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTINTHNHNH TDHNSPEKMQ GCQDRIHALE EERRKIQVFS RELPLCLDLV TQAIEACKQQ  60
LSGTTTEYNL NGQSECSEQT SSDAPVLEEF TLSKRASDGE EQESKKPEHD STINIAKNCQ  120
KSDWLRSVQL WNQTPDLPSN EDSPKKVGVS EVNRNGSGGA FHPFKKEKSQ VGSGAVVVAP  180
APVNRSVPPA STSSSAETGD KKEGQSQRKA RRCWSTELHR KFLQALQQLG GSHLATPKQI  240
RELMKVDGLT NDEVKSHLQK YRLHSRRPSP SIQNNNSSQA PQFVVVGGIW VPPEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-13209262154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13209262154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13209262154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13209262154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13209267260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070832.11e-150myb family transcription factor EFM
SwissprotQ9FPE87e-85HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A4D9BPT11e-162A0A4D9BPT1_SALSN; Two-component response regulator ARR-B family
STRINGVIT_01s0011g03110.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52192438
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.15e-79G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]