PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029736-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 297aa MW: 34054 Da PI: 7.1242

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029736-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.2	2.3e-38	2	101	32	129
NAM 32 evikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116 evi+evd++k+ePwdL++k+k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g SMil_00029736-RA_Salv 2 EVIREVDLNKIEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRN-SFNKIGMRKTLVFYRGRAPHG 88 589***********964444222455*********************************9.8889************* PP NAM 117 ektdWvmheyrle 129 +k+dW+mheyrle SMil_00029736-RA_Salv 89 QKSDWIMHEYRLE 101 *********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	45.991	1	122	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-43	2	122	IPR003441	NAC domain
Pfam	PF02365	6.8E-16	26	100	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEVIREVDLN KIEPWDLQEK CKIGSTPQNE WYFFSHKDRK YPTGSRTNRA TSAGFWKATG 60 RDKCIRNSFN KIGMRKTLVF YRGRAPHGQK SDWIMHEYRL EDSNNEPPPN EDGWVVCRVF 120 KKKNLFKING TSTSTEGGGM MADPNSSIFA QRNNINASMN QYDLLHNGAD LNYSHIPVDQ 180 YPQVESHNFH LKPLMLTSGS NYDHPDYDHH HHHHPPPLIN NMHVKQLMSR DDCESSATPP 240 APPPPPPNFQ SCEPGGLECD HSSQPMNQWD PLAVTSNPTQ INHLSLRSEM DFWAYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-38	1	124	46	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-38	1	124	46	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-38	1	124	46	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-38	1	124	46	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-38	1	124	49	170	NAC domain-containing protein 19
3swm_B	2e-38	1	124	49	170	NAC domain-containing protein 19
3swm_C	2e-38	1	124	49	170	NAC domain-containing protein 19
3swm_D	2e-38	1	124	49	170	NAC domain-containing protein 19
3swp_A	2e-38	1	124	49	170	NAC domain-containing protein 19
3swp_B	2e-38	1	124	49	170	NAC domain-containing protein 19
3swp_C	2e-38	1	124	49	170	NAC domain-containing protein 19
3swp_D	2e-38	1	124	49	170	NAC domain-containing protein 19
4dul_A	2e-38	1	124	46	167	NAC domain-containing protein 19
4dul_B	2e-38	1	124	46	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098911.1	1e-135	protein BEARSKIN1
Swissprot	Q9SV87	1e-82	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2G9G8M7	1e-131	A0A2G9G8M7_9LAMI; Uncharacterized protein
STRING	AES87863	1e-96	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	2e-85	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]