PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029733-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 441aa    MW: 49275.6 Da    PI: 6.518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029733-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-14285331455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h  +ErrRR+++N++f  Lr+++P       +K++Ka+iL  ++eY+k+L+
  SMil_00029733-RA_Salv 285 NHVLAERRRREKLNERFVVLRSMVPFV-----TKMDKASILADTIEYLKQLK 331
                            6899**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-22374IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.104281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-19285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18285349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.52E-15285335No hitNo description
PfamPF000104.1E-12285330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-17287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.285367441IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0016021Cellular Componentintegral component of membrane
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
LQRLPGKAYV DRQHIWLTRA NKADSTLFSR TILAESAKIQ TVVCIPLLDG VVELGTTQRV  60
EEDIGLIQRV KSFFSHCQNP KPSRQALSGH STSNPTSSAP AYYSPPPFAP PQVGEKEEEE  120
EEEEEEEEVE SDSDQNPVEA MQLDMSDQDI RAGSPDDSEN NLGSNFHHLA ASHGGLDTAA  180
TMLRWPCKNP IVNATLQPPH SVDIIAEEDT HYSQTVSSLL ENQSNRWSKL SSASASASAF  240
SKWQAASSSR RHNQILGGAS QWVLKYILFS LPLLHTKPRD DLGGNHVLAE RRRREKLNER  300
FVVLRSMVPF VTKMDKASIL ADTIEYLKQL KERIEQLEAE RKGGRREKRK LRMAEAVEVS  360
IIESDALVEI SCLHRGGLLL DVMQMLRGLG IHVTTVQSSI NNATFYAELR AKVTESANGR  420
RPSIMEVKTT IKQIIQHQIQ S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14285341864Transcription factor MYC2
5gnj_B1e-14285341864Transcription factor MYC2
5gnj_E1e-14285341864Transcription factor MYC2
5gnj_F1e-14285341864Transcription factor MYC2
5gnj_G1e-14285341864Transcription factor MYC2
5gnj_I1e-14285341864Transcription factor MYC2
5gnj_M1e-14285341864Transcription factor MYC2
5gnj_N1e-14285341864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294ERRRRE
2290295RRRREK
3345351REKRKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574490.0KP257449.1 Salvia miltiorrhiza clone 16 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079838.11e-151truncated basic helix-loop-helix protein A
SwissprotE3SXU41e-127BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0H3YBQ90.0A0A0H3YBQ9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D00287.1.p1e-140(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-52bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]