PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029579-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 124aa MW: 14707.7 Da PI: 5.4583

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029579-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.4	1e-12	4	54	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f+++q+++L ++Fe + ++++++ eLA+ +gL+ +qV+ WF Ra +k SMil_00029579-RA_Salv 4 RFEEHQIKALRSAFEASDRLTKSRKNELAEATGLDVEQVSSWFSRERAGKK 54 69********************************************99766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.714	1	56	IPR001356	Homeobox domain
SMART	SM00389	5.4E-5	2	60	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-11	3	55	IPR009057	Homeodomain-like
CDD	cd00086	2.68E-7	4	51	No hit	No description
Pfam	PF00046	3.7E-10	4	54	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.5E-13	4	56	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MAKRFEEHQI KALRSAFEAS DRLTKSRKNE LAEATGLDVE QVSSWFSRER AGKKARESVF 60 LLEFDYLRLQ EALRLSLERE NVLQLEIEEC KKKAVEIEAK NQRLRESCKR AVEFDEVCEW 120 ELRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087134.2	1e-25	homeobox-leucine zipper protein ATHB-20-like
TrEMBL	A0A2G9I714	3e-26	A0A2G9I714_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15650	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01220.1	2e-07	homeobox protein 20