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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029564-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bZIP | ||||||||
Protein Properties | Length: 281aa MW: 31618.4 Da PI: 7.0802 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.6 | 1.3e-08 | 140 | 193 | 5 | 58 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 kr++r NR +A rs +RK +i+eL+ kv++L++ +L + +++ SMil_00029564-RA_Salv 140 KRAKRIWANRQSAARSKERKMRYIAELQSKVQSLQTDKASLSMQFALMQEDTNC 193 9***********************************999998777666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-11 | 136 | 200 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.0E-7 | 137 | 187 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.714 | 138 | 201 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 140 | 190 | No hit | No description |
SuperFamily | SSF57959 | 5.34E-10 | 140 | 194 | No hit | No description |
CDD | cd14703 | 3.38E-18 | 141 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MNSRSWLPPL GRSSVSSYST KPEQSASSNL RPIGPECSFK KEHKMSSHSS QFSFEISRMP 60 ENPRIIGHRR THSDVLALLN DVSFDGDLGI VGGSDGLSVF DDTEEESAAR QMQVFMHTAP 120 ESDKSISAAN LAELALTDPK RAKRIWANRQ SAARSKERKM RYIAELQSKV QSLQTDKASL 180 SMQFALMQED TNCLASENIE LKLQLQSFEQ QVHLQDAVND ALKEEIQHLK VLTGQAMLNG 240 PAPPPYGTNQ NYNTNSHAQP LQYQFRQHQL DQFQPRQLLL H |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021982615.1 | 8e-80 | probable transcription factor PosF21 | ||||
Swissprot | Q69IL4 | 3e-55 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A4D8XNJ8 | 1e-137 | A0A4D8XNJ8_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_008721m | 2e-77 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20447 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 1e-56 | bZIP family protein |
Publications ? help Back to Top | |||
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