PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029564-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 281aa    MW: 31618.4 Da    PI: 7.0802
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029564-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.61.3e-08140193558
                            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                            kr++r   NR +A rs +RK  +i+eL+ kv++L++   +L  +   +++    
  SMil_00029564-RA_Salv 140 KRAKRIWANRQSAARSKERKMRYIAELQSKVQSLQTDKASLSMQFALMQEDTNC 193
                            9***********************************999998777666666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-11136200IPR004827Basic-leucine zipper domain
PfamPF077161.0E-7137187IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.714138201IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-7140190No hitNo description
SuperFamilySSF579595.34E-10140194No hitNo description
CDDcd147033.38E-18141190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNSRSWLPPL GRSSVSSYST KPEQSASSNL RPIGPECSFK KEHKMSSHSS QFSFEISRMP  60
ENPRIIGHRR THSDVLALLN DVSFDGDLGI VGGSDGLSVF DDTEEESAAR QMQVFMHTAP  120
ESDKSISAAN LAELALTDPK RAKRIWANRQ SAARSKERKM RYIAELQSKV QSLQTDKASL  180
SMQFALMQED TNCLASENIE LKLQLQSFEQ QVHLQDAVND ALKEEIQHLK VLTGQAMLNG  240
PAPPPYGTNQ NYNTNSHAQP LQYQFRQHQL DQFQPRQLLL H
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021982615.18e-80probable transcription factor PosF21
SwissprotQ69IL43e-55RF2A_ORYSJ; Transcription factor RF2a
TrEMBLA0A4D8XNJ81e-137A0A4D8XNJ8_SALSN; Uncharacterized protein
STRINGcassava4.1_008721m2e-77(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2044723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-56bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]
  5. Ordiz MI,Yang J,Barbazuk WB,Beachy RN
    Functional analysis of the activation domain of RF2a, a rice transcription factor.
    Plant Biotechnol. J., 2010. 8(7): p. 835-44
    [PMID:20408988]