PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00029368-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 237aa MW: 26728.7 Da PI: 9.4435

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00029368-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.8	6.8e-07	187	213	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + SMil_00029368-RA_Salv 187 SHSLAERARREKISERMKILQDLVPGC 213 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-8	181	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.93E-4	181	217	No hit	No description
PROSITE profile	PS50888	10.734	183	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-8	186	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-4	187	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MYSQSEPERV VHHRSYVYRD REATHLCLPL FLLIVDDVQE FIGLEKPFIE YSFQDYNAGL 60 SLYGDKAKPK TYAARFATPD GHASFQLLGG VVGALVYIFP EFVIQIYAPG LWILAEGQII 120 REIAIKQNER RNEGDSKRMK AVGELKVEGE GNSGKGAAAV ERRSKLDELP KQDYIHVRAR 180 RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVRAAI KVKASVIICF TSSRKSC

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257443	0.0	KP257443.1 Salvia miltiorrhiza clone 10 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0H3Y8S0	1e-174	A0A0H3Y8S0_SALMI; Basic helix-loop-helix transcription factor

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	8e-27	BIG PETAL P