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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SMil_00029259-RA_Salv |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
HD-ZIP |
| Protein Properties |
Length: 239aa MW: 27415.3 Da PI: 4.7253 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00029259-RA_Salv | genome | NDCTCM | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.7 | 2.3e-19 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le+ F+ ++++ +++ eLAkklgL+ rqV +WFqNrRa+ k
SMil_00029259-RA_Salv 70 KKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSK 123
56789***********************************************99 PP
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| 2 | HD-ZIP_I/II | 124.6 | 4.4e-40 | 69 | 157 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
ekkrrl++eqv++LE+sF e+kLep+rK+ela++Lglqprqva+WFqnrRAR ktk lE++y +Lk++yd+lk++ ++L +++e+L+
SMil_00029259-RA_Salv 69 EKKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSKTKVLEREYGSLKSCYDKLKADYDTLFSDNEKLK 156
69*************************************************************************************9 PP
HD-ZIP_I/II 89 e 89
+
SMil_00029259-RA_Salv 157 N 157
6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MKSSPVFDVA DALLNDERIP SDALWIPNSS PSLHAMVSFE QSRGERSNRS RQSDCDDGDS 60
DSCFHHPPEK KRRLTAEQVQ FLEKSFAVEN KLEPDRKNEL AKKLGLQPRQ VAIWFQNRRA 120
RSKTKVLERE YGSLKSCYDK LKADYDTLFS DNEKLKNEKG NDEISPLDAA PCKQEDASSY 180
SSHVLEASDF EQGDEDDECL VQRLCLPKLE AEYYDDHLQP NSCNLGFPVQ NQGTWFWQC
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