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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029061-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 354aa MW: 38818.9 Da PI: 7.9575 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.2 | 3.4e-32 | 196 | 251 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ SMil_00029061-RA_Salv 196 KARRCWSPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 251 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.35 | 193 | 253 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-18 | 194 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 194 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-27 | 196 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-8 | 198 | 249 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MVIKDHNNHS DFSENMQRCH DYIKGLEEER CKIQVFQREL PLCLDLVTQA IETCRQQLSG 60 TTTDHNLHGQ SECSEQTSNH VPVFEEFMPI KRASPDSDGE EHESNKSKIN QTSDSNNDAK 120 ICQKSDWLRS VQLWNQTPDP PSKEDSATKF AASEVKTDGG GALKKERGVA APAPAPASTS 180 STAENGGGNK KESHRKARRC WSPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE 240 VKSHLQKYRL HTRRPSSSTQ NNNAQTPQFV VVGGLWMPPD YASMATTTAS PGVTFSAPPP 300 PFQEPPSSPK RRQHIKPSSQ SNDGCSYSKG GAQSCSPATS SSTHTTTTAV SPAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-14 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 196 | 249 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077211.1 | 1e-147 | myb family transcription factor EFM-like | ||||
Swissprot | Q9FPE8 | 2e-93 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A4D8ZB00 | 1e-173 | A0A4D8ZB00_SALSN; Two-component response regulator ARR-B family | ||||
STRING | VIT_01s0011g03110.t01 | 1e-125 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5219 | 24 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 9e-93 | G2-like family protein |
Publications ? help Back to Top | |||
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