PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029058-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 21473.8 Da PI: 4.9523 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 50 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+ ++++++++lG++ W+ Ia++++ gRt++++k+ w+++l SMil_00029058-RA_Salv 50 RGNFSREEEAIIINLHQELGNR-WSVIASRLP-GRTDNEIKNIWHTHL 95 89********************.*********.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.61E-23 | 31 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.147 | 31 | 44 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-12 | 31 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.579 | 45 | 99 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 49 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 50 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.39E-11 | 52 | 95 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 56 | 99 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
LQKKISSSSI SSTTTAMATG GPFPNGPGFL RCGKSCRLRW MNYLRPDIKR GNFSREEEAI 60 IINLHQELGN RWSVIASRLP GRTDNEIKNI WHTHLKKRLC KRSRAEPEAR NESTSDEDAT 120 NSPMHSFSEV SSENPPEMDD SFWSEVLSGD DFVTDSPLRL SESVNEDGGM DFWYNLFNRA 180 DDILDLPDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-19 | 31 | 99 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059376 | 0.0 | KF059376.1 Salvia miltiorrhiza MYB-related transcription factor (MYB22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080041.1 | 3e-56 | transcription factor MYB14 | ||||
Refseq | XP_022872992.1 | 8e-56 | transcription factor MYB14-like | ||||
Swissprot | Q9SJX8 | 2e-45 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | W8CJZ8 | 1e-115 | W8CJZ8_SALMI; MYB transcription factor | ||||
STRING | XP_004296369.1 | 1e-52 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17373 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-47 | myb domain protein 14 |
Publications ? help Back to Top | |||
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