PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00028977-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 284aa MW: 31325.6 Da PI: 6.1287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028977-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + Fs++ L H++ H SMil_00028977-RA_Salv 98 FTCSFCRREFSTSQALGGHQNAH 120 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.7E-4	95	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.63E-6	95	125	No hit	No description
PROSITE profile	PS50157	11.531	98	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
METLEPCHSE ASNVSVTSEE SPTTQNINKT KKNEEEEEEE YNSKHETATS RVLLDLKLAN 60 HDELMSPSSK LELELLNSPN PSESNNEADP RPPESKTFTC SFCRREFSTS QALGGHQNAH 120 KQERALAKHR HNMVDMTAAG GGAPPPPYGL PGYSYYPYSA FPIHGSFSRP LGIRAESIIQ 180 KPYSYHQTWP PLSFACRISR EKMPRAFLIS PSPSTPYDGM KVENFQPRGS LNLGGNPNPT 240 VTDINACHGA TNKANEGDDN GHQRLKFGGG DQRDASGLDL ELKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086308.1	5e-80	zinc finger protein 3-like
TrEMBL	A0A2G9H966	8e-84	A0A2G9H966_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-14	C2H2 family protein