PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028807-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 374aa    MW: 42067.4 Da    PI: 9.2057
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028807-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-201031911499
                            T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                     B3  14 grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             r+++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ l+v
  SMil_00028807-RA_Salv 103 LRFSVPRYCAETIfprldysADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGDLCV 186
                            4789999999999**99997556656..6999*********************************************..4488999** PP

                            EEE-S CS
                     B3  95 kvfrk 99 
                            +++r+
  SMil_00028807-RA_Salv 187 GIRRA 191
                            **997 PP
2Auxin_resp116.71.9e-38251331483
             Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+++++FevvY+Prast+eF+v++++v++a++v++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  SMil_00028807-RA_Salv 251 LAANGQPFEVVYYPRASTPEFCVRASSVSAAMRVQWCAGMRFKMPFETEDSSRISWfMGTIASVQVVDPLRWPNSPWRLLQ 331
                            6899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.35190192IPR003340B3 DNA binding domain
SMARTSM010192.1E-1597192IPR003340B3 DNA binding domain
SuperFamilySSF1019367.59E-24101194IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-31103194IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-18104191IPR003340B3 DNA binding domain
CDDcd100171.89E-16104190No hitNo description
PfamPF065073.0E-33251331IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKEVGERSLD SELWHACAGG MVQMPPVNSK VFYFPQGHAE HTLTTVDFGA LPKFPPMILC  60
RVAAVKYLAD PDTDEVYAKI RLIPVGKTST VSMTMDFRET TDLRFSVPRY CAETIFPRLD  120
YSADPPVQNV IAKDVHGETW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRAE  180
NGDLCVGIRR AKRSGVGNEP SSGWNSGGAG NFGFSSFLKE DESRLMHRVG SGNLREKGKV  240
RPESVVEATF LAANGQPFEV VYYPRASTPE FCVRASSVSA AMRVQWCAGM RFKMPFETED  300
SSRISWFMGT IASVQVVDPL RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VEMVSNMPTI  360
LHLSPFSPPR KKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-78935251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367210.0KX036721.1 Salvia miltiorrhiza auxin response factor ARF1 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089287.10.0auxin response factor 18 isoform X1
RefseqXP_020552360.10.0auxin response factor 18 isoform X1
RefseqXP_020552361.10.0auxin response factor 22 isoform X3
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGMigut.D02231.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-180auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]