PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028780-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 85aa MW: 9327.13 Da PI: 10.3052 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.8 | 1.6e-24 | 5 | 54 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n r +f+kRr+ ++KKA+EL vLC+aevaviifs +gklye++s SMil_00028780-RA_Salv 5 KIDNPASRLASFAKRRASLFKKAHELAVLCGAEVAVIIFSADGKLYEFAS 54 699*********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.637 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-20 | 4 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-25 | 5 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-23 | 5 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-15 | 18 | 33 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-15 | 33 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MSPAKIDNPA SRLASFAKRR ASLFKKAHEL AVLCGAEVAV IIFSADGKLY EFASSSMQKI 60 LTKFKMCKEL GIRAAMQSKP EVCFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091774.1 | 3e-24 | agamous-like MADS-box protein AGL15 | ||||
Swissprot | Q6VAM4 | 5e-20 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
Swissprot | Q9LT93 | 1e-19 | AGL71_ARATH; MADS-box protein AGL71 | ||||
STRING | XP_010067793.1 | 2e-20 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 3e-22 | AGAMOUS-like 71 |
Publications ? help Back to Top | |||
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