PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00028713-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 146aa MW: 16242.5 Da PI: 7.3687

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00028713-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.8	2.6e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lpe++r da++slvyeA+ar rdPvyG+vg+i+ lq+q++ SMil_00028713-RA_Salv 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPEQQRGDAVNSLVYEANARGRDPVYGCVGTISYLQNQVS 93 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 ql+ +la++++e SMil_00028713-RA_Salv 94 QLQMQLAVAQAE 105 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.494	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPEQQRG 60 DAVNSLVYEA NARGRDPVYG CVGTISYLQN QVSQLQMQLA VAQAEILCIQ MHQDKSYFLQ 120 NDLLNIPIPN ANSFNKESLY GHDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021820147.1	8e-79	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-70	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A314UGH6	2e-77	A0A314UGH6_PRUYE; LOB domain-containing protein 12-like
STRING	XP_008233810.1	1e-77	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-73	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]