PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028483-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 138aa    MW: 15528.8 Da    PI: 8.5149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028483-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-054365123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C + F++   L  H+++H
  SMil_00028483-RA_Salv 43 YPCSFCRREFRSAQALGGHMNVH 65
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-64069No hitNo description
PROSITE profilePS5015711.0744370IPR007087Zinc finger, C2H2
PfamPF139123.9E-64366IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEHHNSSTHY LMWKVQSEFP TAMNSSQPPP FIHDSLVWPP RSYPCSFCRR EFRSAQALGG  60
HMNVHRRDRA KLKQSSPPPP RTTLAPPPLM NCGAGGEDNF GESDVVCKRH KLMCFPAIEE  120
IDLELRLGAP VVKLGHIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-133865229superman protein
2l1o_A4e-133865229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573RRDRAKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191729.11e-25PREDICTED: uncharacterized protein LOC109186258
RefseqXP_020549121.11e-24transcriptional regulator SUPERMAN-like
TrEMBLA0A4D8ZQA44e-40A0A4D8ZQA4_SALSN; Uncharacterized protein
STRINGAquca_009_00898.12e-21(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-21zinc-finger protein 10